Position: PhD student
Place of birth: Biloela, Central Queensland, Australia
Advisors: Dr Lee Hickey, Prof. Jerome Frankowiak, Mr Greg Platz
Barley, the cereal has several common uses, the most popular being malt production for the brewing industry and cattle feed for the beef industry. Barley is the second largest crop in Australia and fourth largest around the world. The wide scale adoption of zero tillage farming practices has seen an increase in many stubble borne diseases in the recent past, including net form of net blotch. This disease is estimated to cause economic losses of $19,000,000 in Australia annually. Many of the barley cultivars grown in Australia do not possess an adequate level of disease resistance to all pathotypes of this pathogen. To breed cultivars with durable resistance, an understanding of the virulences in the pathogen population and the resistances host gene pool is essential.
Characterise the Ptt population through a diversity study:
- Study 125 single spore isolates of Ptt with a differential set of 12 barley cultivars
- Identify pathotypic variation in the Australian pathogen population
Identify quantitative trait loci (QTL) providing resistance to Ptt through association mapping of a barley breeding population:
- Phenotypic data of breeding lines collected over four years will be analysed using two marker platforms (DArT and DArTseq)
- Detected QTL will be cross referenced to previous studies via closely linked markers
- Novel QTL will be further examined
Conduct linkage disequilibrium (LD) mapping of a population of recombinant inbred lines (RILs) to identify resistance Ptt in:
- Parents of the RIL population (Prior and Skiff) are differentially susceptible to two common Ptt pathotypes from Queensland.
- Pathotype 007: Prior Resistant – Skiff Susceptible
- Pathotype 064: Prior Susceptible – Skiff Resistant
- The population of 300+ lines will be screened at seedling and adult stage over 2 years with both pathotypes (007 and 064)
Ustilie RNAseq technology to conduct spatio temporal transcriptomic analysis of barley infected with Ptt:
- Pathotype 007 and 064 will be inoculated onto Prior, Skiff and the resistant line CIho 5791
- Leaf tissue and images will be captured at 12 time points over 9 days to investigate differences in the expression of plant defence genes
The diversity study clustered Ptt isolates into 4 broad groups which contained pathotypic variation within and between groups. The manuscript of this study is in the final stages of drafting.
Association mapping of the breeding population identified several QTL on chromosomes 3H, 4H, 5H and 6H. The QTL on 4H were effective only at the seeding stage. QTL located on 6H were effective at both growth stages. The first draft of the manuscript for this study is nearing completion.
Preliminary data indicates some of the lines in the RIL population are resistant to both pathotypes and some susceptible to both pathotypes. This suggests that the resistances are independent. The population is currently undergoing seed increase of the F6 generation for second year testing in 2015.
The leaf tissue, photographs and notes for each time point of the transcriptional experiment has been collected. RNA will be extracted and sent to AGRF for sequencing.